J3_6RBD_012
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6RBD|1|2|U|1473, 6RBD|1|2|G|1539
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6RBD_012 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.1519
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6RBD|1|2|C|1470
6RBD|1|2|A|1471
6RBD|1|2|C|1472
6RBD|1|2|U|1473
6RBD|1|2|G|1474
*
6RBD|1|2|C|1533
6RBD|1|2|G|1534
6RBD|1|2|U|1535
6RBD|1|2|G|1536
6RBD|1|2|C|1537
6RBD|1|2|U|1538
6RBD|1|2|G|1539
6RBD|1|2|G|1540
*
6RBD|1|2|C|1571
6RBD|1|2|G|1572
6RBD|1|2|A|1573
6RBD|1|2|G|1574
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain S
- 40S ribosomal protein S18-A
- Chain T
- 40S ribosomal protein S19-A
- Chain Z
- 40S ribosomal protein S25-A
- Chain l
- Serine/threonine-protein kinase RIO2
Coloring options: