J3_6RBE_008

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCUUAG*CGAGAC*GCAAUAAC

Length

22 nucleotides

Bulged bases

6RBE|1|2|U|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|G|1281
6RBE|1|2|U|1282
6RBE|1|2|U|1283
6RBE|1|2|C|1284
6RBE|1|2|U|1285
6RBE|1|2|U|1286
6RBE|1|2|A|1287
6RBE|1|2|G|1288
*
6RBE|1|2|C|1327
6RBE|1|2|G|1328
6RBE|1|2|A|1329
6RBE|1|2|G|1330
6RBE|1|2|A|1331
6RBE|1|2|C|1332
*
6RBE|1|2|G|1419
6RBE|1|2|C|1420
6RBE|1|2|A|1421
6RBE|1|2|A|1422
6RBE|1|2|U|1423
6RBE|1|2|A|1424
6RBE|1|2|A|1425
6RBE|1|2|C|1426

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain D

40S ribosomal protein S3

Chain Q

40S ribosomal protein S16-A

Chain R

40S ribosomal protein S17-A

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29-A