J3_6RBE_009

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGA*UUUGUC*GAUAA

Length

15 nucleotides

Bulged bases

6RBE|1|2|A|1321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|U|1293
6RBE|1|2|G|1294
6RBE|1|2|G|1295
6RBE|1|2|A|1296
*
6RBE|1|2|U|1301
6RBE|1|2|U|1302
6RBE|1|2|U|1303
6RBE|1|2|G|1304
6RBE|1|2|U|1305
6RBE|1|2|C|1306
*
6RBE|1|2|G|1318
6RBE|1|2|A|1319
6RBE|1|2|U|1320
6RBE|1|2|A|1321
6RBE|1|2|A|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17-A