J3_6RBE_013

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6RBE|1|2|A|217, 6RBE|1|2|U|238, 6RBE|1|2|C|239, 6RBE|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|A|213
6RBE|1|2|G|214
6RBE|1|2|A|215
6RBE|1|2|U|216
6RBE|1|2|A|217
6RBE|1|2|A|218
6RBE|1|2|A|219
6RBE|1|2|A|220
6RBE|1|2|A|221
6RBE|1|2|A|222
6RBE|1|2|U|223
6RBE|1|2|C|224
6RBE|1|2|A|225
6RBE|1|2|A|226
6RBE|1|2|U|227
6RBE|1|2|G|228
*
6RBE|1|2|C|237
6RBE|1|2|U|238
6RBE|1|2|C|239
6RBE|1|2|U|240
6RBE|1|2|U|241
6RBE|1|2|U|242
6RBE|1|2|G|243
*
6RBE|1|2|C|250
6RBE|1|2|A|251
6RBE|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A