J3_6RI5_020
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6RI5|1|A|U|343, 6RI5|1|A|A|351, 6RI5|1|y|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6RI5_020 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0647
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6RI5|1|A|C|340
6RI5|1|A|G|341
6RI5|1|A|A|342
6RI5|1|A|U|343
6RI5|1|A|A|344
6RI5|1|A|G|345
6RI5|1|A|C|346
6RI5|1|A|G|347
6RI5|1|A|A|348
6RI5|1|A|A|349
6RI5|1|A|C|350
6RI5|1|A|A|351
6RI5|1|A|A|352
6RI5|1|A|G|353
6RI5|1|A|U|354
6RI5|1|A|A|355
6RI5|1|A|C|356
*
6RI5|1|A|G|363
6RI5|1|A|G|364
6RI5|1|A|A|365
6RI5|1|A|A|366
6RI5|1|A|A|367
6RI5|1|A|G|368
*
6RI5|1|y|C|21
6RI5|1|y|U|22
6RI5|1|y|U|23
6RI5|1|y|G|24
Current chains
- Chain A
- 25S RNA
- Chain y
- 5.8S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain X
- 60S ribosomal protein L26-A
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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