J3_6RI5_023

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RI5_023 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0998

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6RI5|1|A|A|1654
6RI5|1|A|G|1655
6RI5|1|A|A|1656
6RI5|1|A|C|1657
6RI5|1|A|G|1658
*
6RI5|1|A|C|1791
6RI5|1|A|C|1792
*
6RI5|1|A|G|1796
6RI5|1|A|A|1797
6RI5|1|A|A|1798
6RI5|1|A|A|1799
6RI5|1|A|A|1800
6RI5|1|A|U|1801

Current chains

Chain A

25S RNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain g

60S ribosomal protein L34-A

Chain m

60S ribosomal protein L43-A