J3_6RM3_007

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGA*UAU*AAUAAA

Length

12 nucleotides

Bulged bases

6RM3|1|L50|U|1978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RM3_007 not in the Motif Atlas

Homologous match to J3_8C3A_010

Geometric discrepancy: 0.5945

The information below is about J3_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|U|1939
6RM3|1|L50|G|1940
6RM3|1|L50|A|1941
*
6RM3|1|L50|U|1965
6RM3|1|L50|A|1966
6RM3|1|L50|U|1967
*
6RM3|1|L50|A|1976
6RM3|1|L50|A|1977
6RM3|1|L50|U|1978
6RM3|1|L50|A|1979
6RM3|1|L50|A|1980
6RM3|1|L50|A|1981

Current chains

Chain L50

23S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LD0

uL18

Chain LJ0

uL5

Chain LT0

eL21