J3_6RXU_003

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RXU_003 not in the Motif Atlas

Homologous match to J3_4V88_036

Geometric discrepancy: 0.2969

The information below is about J3_4V88_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6RXU|1|C1|U|1752
6RXU|1|C1|G|1753
6RXU|1|C1|G|1754
6RXU|1|C1|A|1755
*
6RXU|1|C1|U|2051
6RXU|1|C1|A|2052
6RXU|1|C1|C|2053
*
6RXU|1|C1|G|2157
6RXU|1|C1|G|2158
6RXU|1|C1|A|2159
6RXU|1|C1|A|2160

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CK

Putative U3 small nucleolar ribonucleoprotein

Chain CN

Emg1

Chain UB

Utp2