J3_6RXU_008
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6RXU_008 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.2543
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6RXU|1|C1|C|1745
6RXU|1|C1|C|1746
6RXU|1|C1|A|1747
6RXU|1|C1|G|1748
*
6RXU|1|C1|C|2164
6RXU|1|C1|U|2165
6RXU|1|C1|A|2166
6RXU|1|C1|G|2167
6RXU|1|C1|U|2168
6RXU|1|C1|A|2169
6RXU|1|C1|A|2170
*
6RXU|1|C1|U|2192
6RXU|1|C1|G|2193
6RXU|1|C1|A|2194
6RXU|1|C1|U|2195
6RXU|1|C1|U|2196
6RXU|1|C1|A|2197
6RXU|1|C1|C|2198
6RXU|1|C1|G|2199
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CK
- Putative U3 small nucleolar ribonucleoprotein
- Chain Cc
- 40S ribosomal protein s5-like protein
- Chain Cj
- 40S ribosomal protein S16-like protein
- Chain Cp
- 40S ribosomal protein S28-like protein
- Chain UA
- Periodic tryptophan protein 2-like protein
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