J3_6RZZ_021

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

6RZZ|1|A|A|398, 6RZZ|1|A|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RZZ_021 not in the Motif Atlas

Homologous match to J3_8P9A_047

Geometric discrepancy: 0.0651

The information below is about J3_8P9A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6RZZ|1|A|A|369
6RZZ|1|A|U|370
6RZZ|1|A|G|371
6RZZ|1|A|A|372
6RZZ|1|A|A|373
6RZZ|1|A|A|374
6RZZ|1|A|A|375
6RZZ|1|A|G|376
6RZZ|1|A|A|377
6RZZ|1|A|A|378
6RZZ|1|A|C|379
*
6RZZ|1|A|G|390
6RZZ|1|A|A|391
6RZZ|1|A|G|392
6RZZ|1|A|U|393
6RZZ|1|A|G|394
6RZZ|1|A|A|395
6RZZ|1|A|A|396
6RZZ|1|A|A|397
6RZZ|1|A|A|398
6RZZ|1|A|A|399
6RZZ|1|A|G|400
6RZZ|1|A|U|401
6RZZ|1|A|A|402
6RZZ|1|A|C|403
6RZZ|1|A|G|404
*
6RZZ|1|y|C|19
6RZZ|1|y|U|20

Current chains

Chain A

25S ribosomal RNA

Chain y

5.8S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain U

60S ribosomal protein L17-A

Chain X

60S ribosomal protein L26-A

Chain k

60S ribosomal protein L39

Chain r

Probable metalloprotease ARX1

Chain u

Cytoplasmic 60S subunit biogenesis factor REI1