J3_6S05_001

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAUUUGAAA*UAAUUUGGAGA*UCGAAG

Length

28 nucleotides

Bulged bases

6S05|1|A|G|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|C|113
6S05|1|A|A|114
6S05|1|A|A|115
6S05|1|A|A|116
6S05|1|A|U|117
6S05|1|A|U|118
6S05|1|A|U|119
6S05|1|A|G|120
6S05|1|A|A|121
6S05|1|A|A|122
6S05|1|A|A|123
*
6S05|1|A|U|149
6S05|1|A|A|150
6S05|1|A|A|151
6S05|1|A|U|152
6S05|1|A|U|153
6S05|1|A|U|154
6S05|1|A|G|155
6S05|1|A|G|156
6S05|1|A|A|157
6S05|1|A|G|158
6S05|1|A|A|159
*
6S05|1|A|U|262
6S05|1|A|C|263
6S05|1|A|G|264
6S05|1|A|A|265
6S05|1|A|A|266
6S05|1|A|G|267

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L8-A

Chain K

60S ribosomal protein L13-A

Chain O

60S ribosomal protein L15-A

Chain Z

60S ribosomal protein L35-A

Chain h

60S ribosomal protein L36-A