J3_6S05_010

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCGAUC*GGAAU*AAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|G|1525
6S05|1|A|U|1526
6S05|1|A|C|1527
6S05|1|A|G|1528
6S05|1|A|A|1529
6S05|1|A|U|1530
6S05|1|A|C|1531
*
6S05|1|A|G|1591
6S05|1|A|G|1592
6S05|1|A|A|1593
6S05|1|A|A|1594
6S05|1|A|U|1595
*
6S05|1|A|A|1612
6S05|1|A|A|1613
6S05|1|A|C|1614

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L25

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L38

Chain k

60S ribosomal protein L39

Chain y

5.8S ribosomal RNA; 5.8S rRNA