J3_6S05_017
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACCGAUAGCGAACAAGUAC*GGAAAG*CUUGGU
- Length
- 32 nucleotides
- Bulged bases
- 6S05|1|A|A|338, 6S05|1|A|U|343, 6S05|1|A|A|351, 6S05|1|y|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S05|1|A|G|337
6S05|1|A|A|338
6S05|1|A|C|339
6S05|1|A|C|340
6S05|1|A|G|341
6S05|1|A|A|342
6S05|1|A|U|343
6S05|1|A|A|344
6S05|1|A|G|345
6S05|1|A|C|346
6S05|1|A|G|347
6S05|1|A|A|348
6S05|1|A|A|349
6S05|1|A|C|350
6S05|1|A|A|351
6S05|1|A|A|352
6S05|1|A|G|353
6S05|1|A|U|354
6S05|1|A|A|355
6S05|1|A|C|356
*
6S05|1|A|G|363
6S05|1|A|G|364
6S05|1|A|A|365
6S05|1|A|A|366
6S05|1|A|A|367
6S05|1|A|G|368
*
6S05|1|y|C|21
6S05|1|y|U|22
6S05|1|y|U|23
6S05|1|y|G|24
6S05|1|y|G|25
6S05|1|y|U|26
Current chains
- Chain A
- 25S ribosomal RNA
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain X
- 60S ribosomal protein L26-A
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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