J3_6S05_021

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGGAGUG*CUCAC

Length

31 nucleotides

Bulged bases

6S05|1|A|G|1236, 6S05|1|A|A|1252, 6S05|1|A|U|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|G|1230
6S05|1|A|A|1231
6S05|1|A|C|1232
6S05|1|A|G|1233
6S05|1|A|G|1234
6S05|1|A|U|1235
6S05|1|A|G|1236
6S05|1|A|G|1237
6S05|1|A|C|1238
*
6S05|1|A|G|1250
6S05|1|A|A|1251
6S05|1|A|A|1252
6S05|1|A|U|1253
6S05|1|A|C|1254
6S05|1|A|C|1255
6S05|1|A|G|1256
6S05|1|A|C|1257
6S05|1|A|U|1258
6S05|1|A|A|1259
6S05|1|A|A|1260
6S05|1|A|G|1261
6S05|1|A|G|1262
6S05|1|A|A|1263
6S05|1|A|G|1264
6S05|1|A|U|1265
6S05|1|A|G|1266
*
6S05|1|A|C|1275
6S05|1|A|U|1276
6S05|1|A|C|1277
6S05|1|A|A|1278
6S05|1|A|C|1279

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain s

Tyrosine-protein phosphatase YVH1