J3_6S05_022

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGUGGG*UCCAA*UCUA

Length

18 nucleotides

Bulged bases

6S05|1|A|A|1482, 6S05|1|A|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|U|1479
6S05|1|A|G|1480
6S05|1|A|A|1481
6S05|1|A|A|1482
6S05|1|A|G|1483
6S05|1|A|U|1484
6S05|1|A|G|1485
6S05|1|A|G|1486
6S05|1|A|G|1487
*
6S05|1|A|U|1855
6S05|1|A|C|1856
6S05|1|A|C|1857
6S05|1|A|A|1858
6S05|1|A|A|1859
*
6S05|1|A|U|1871
6S05|1|A|C|1872
6S05|1|A|U|1873
6S05|1|A|A|1874

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A