J3_6S05_023
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCCUG*CAGGCCACCAU
- Length
- 32 nucleotides
- Bulged bases
- 6S05|1|A|C|1556, 6S05|1|A|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S05|1|A|A|1537
6S05|1|A|G|1538
6S05|1|A|A|1539
6S05|1|A|U|1540
6S05|1|A|G|1541
6S05|1|A|G|1542
*
6S05|1|A|C|1551
6S05|1|A|G|1552
6S05|1|A|U|1553
6S05|1|A|U|1554
6S05|1|A|U|1555
6S05|1|A|C|1556
6S05|1|A|A|1557
6S05|1|A|A|1558
6S05|1|A|A|1559
6S05|1|A|G|1560
6S05|1|A|G|1561
6S05|1|A|C|1562
6S05|1|A|C|1563
6S05|1|A|U|1564
6S05|1|A|G|1565
*
6S05|1|A|C|1574
6S05|1|A|A|1575
6S05|1|A|G|1576
6S05|1|A|G|1577
6S05|1|A|C|1578
6S05|1|A|C|1579
6S05|1|A|A|1580
6S05|1|A|C|1581
6S05|1|A|C|1582
6S05|1|A|A|1583
6S05|1|A|U|1584
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L2-A
- Chain H
- 60S ribosomal protein L8-A
- Chain O
- 60S ribosomal protein L15-A
- Chain W
- 60S ribosomal protein L25
- Chain Y
- 60S ribosomal protein L27-A
- Chain i
- 60S ribosomal protein L37-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: