J3_6S05_025

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUG*CUUAUUCAA*UUGAAGACAUU

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|A|2432
6S05|1|A|U|2433
6S05|1|A|U|2434
6S05|1|A|G|2435
*
6S05|1|A|C|2512
6S05|1|A|U|2513
6S05|1|A|U|2514
6S05|1|A|A|2515
6S05|1|A|U|2516
6S05|1|A|U|2517
6S05|1|A|C|2518
6S05|1|A|A|2519
6S05|1|A|A|2520
*
6S05|1|A|U|2587
6S05|1|A|U|2588
6S05|1|A|G|2589
6S05|1|A|A|2590
6S05|1|A|A|2591
6S05|1|A|G|2592
6S05|1|A|A|2593
6S05|1|A|C|2594
6S05|1|A|A|2595
6S05|1|A|U|2596
6S05|1|A|U|2597

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain H

60S ribosomal protein L8-A

Chain O

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L36-A