J3_6S0X_019
3D structure
- PDB id
- 6S0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6S0X|1|a|A|967, 6S0X|1|a|A|984, 6S0X|1|a|G|985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S0X_019 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.2702
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6S0X|1|a|U|964
6S0X|1|a|U|965
6S0X|1|a|U|966
6S0X|1|a|A|967
6S0X|1|a|A|968
6S0X|1|a|U|969
6S0X|1|a|U|970
6S0X|1|a|C|971
*
6S0X|1|a|G|982
6S0X|1|a|A|983
6S0X|1|a|A|984
6S0X|1|a|G|985
6S0X|1|a|A|986
6S0X|1|a|A|987
6S0X|1|a|C|988
6S0X|1|a|C|989
6S0X|1|a|U|990
6S0X|1|a|U|991
6S0X|1|a|A|992
6S0X|1|a|C|993
*
6S0X|1|a|G|1231
6S0X|1|a|G|1232
6S0X|1|a|C|1233
6S0X|1|a|U|1234
6S0X|1|a|A|1235
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
Coloring options: