3D structure

PDB id
6S12 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GC*GUGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S12_001 not in the Motif Atlas
Geometric match to J3_4V9F_011
Geometric discrepancy: 0.1065
The information below is about J3_4V9F_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

6S12|1|A|G|30
6S12|1|A|C|31
*
6S12|1|A|G|520
6S12|1|A|U|521
6S12|1|A|G|522
6S12|1|A|A|523
6S12|1|A|A|524
6S12|1|A|A|525
6S12|1|A|A|526
6S12|1|A|G|527
*
6S12|1|A|C|554
6S12|1|A|C|555

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L20
Chain S
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0971 s