J3_6S12_001

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S12_001 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.1065

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6S12|1|A|G|30
6S12|1|A|C|31
*
6S12|1|A|G|520
6S12|1|A|U|521
6S12|1|A|G|522
6S12|1|A|A|523
6S12|1|A|A|524
6S12|1|A|A|525
6S12|1|A|A|526
6S12|1|A|G|527
*
6S12|1|A|C|554
6S12|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain S

50S ribosomal protein L24