J3_6S12_003

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6S12|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S12_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.3723

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6S12|1|A|C|272
6S12|1|A|A|273
6S12|1|A|A|274
6S12|1|A|A|275
6S12|1|A|C|276
*
6S12|1|A|G|295
6S12|1|A|G|296
6S12|1|A|G|297
6S12|1|A|U|298
6S12|1|A|U|299
6S12|1|A|G|300
6S12|1|A|U|301
6S12|1|A|A|302
*
6S12|1|A|U|415
6S12|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains