J3_6S12_004

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6S12|1|A|U|731, 6S12|1|A|G|837, 6S12|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S12_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1404

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6S12|1|A|U|728
6S12|1|A|G|729
6S12|1|A|A|730
6S12|1|A|U|731
6S12|1|A|C|732
6S12|1|A|U|733
6S12|1|A|A|734
*
6S12|1|A|U|818
6S12|1|A|A|819
6S12|1|A|G|820
*
6S12|1|A|C|836
6S12|1|A|G|837
6S12|1|A|A|838
6S12|1|A|A|839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2