J3_6S12_006

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S12_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.2631

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6S12|1|A|C|1335
6S12|1|A|G|1336
6S12|1|A|A|1337
6S12|1|A|U|1338
6S12|1|A|U|1339
6S12|1|A|G|1340
*
6S12|1|A|C|1669
6S12|1|A|A|1670
6S12|1|A|A|1671
*
6S12|1|A|U|1683
6S12|1|A|A|1684
6S12|1|A|A|1685
6S12|1|A|G|1686

Current chains

Chain A

23S ribosomal RNA

Nearby chains