J3_6S12_020
3D structure
- PDB id
- 6S12 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAG*CAUAGAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 6S12|1|A|U|2361, 6S12|1|A|A|2363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S12_020 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.464
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6S12|1|A|C|2322
6S12|1|A|U|2323
6S12|1|A|C|2324
6S12|1|A|A|2325
6S12|1|A|G|2326
*
6S12|1|A|C|2344
6S12|1|A|A|2345
6S12|1|A|U|2346
6S12|1|A|A|2347
6S12|1|A|G|2348
6S12|1|A|A|2349
6S12|1|A|G|2350
*
6S12|1|A|C|2359
6S12|1|A|A|2360
6S12|1|A|U|2361
6S12|1|A|A|2362
6S12|1|A|A|2363
6S12|1|A|G|2364
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L18
- Chain U
- 50S ribosomal protein L27
Coloring options: