J3_6S13_004
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6S13|1|A|U|731, 6S13|1|A|G|837, 6S13|1|A|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S13_004 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.1532
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6S13|1|A|U|728
6S13|1|A|G|729
6S13|1|A|A|730
6S13|1|A|U|731
6S13|1|A|C|732
6S13|1|A|U|733
6S13|1|A|A|734
*
6S13|1|A|U|818
6S13|1|A|A|819
6S13|1|A|G|820
*
6S13|1|A|C|836
6S13|1|A|G|837
6S13|1|A|A|838
6S13|1|A|A|839
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
Coloring options: