J3_6S13_006

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

6S13|1|A|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S13_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.2909

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6S13|1|A|C|1335
6S13|1|A|G|1336
6S13|1|A|A|1337
6S13|1|A|U|1338
6S13|1|A|U|1339
6S13|1|A|G|1340
*
6S13|1|A|C|1669
6S13|1|A|A|1670
6S13|1|A|A|1671
*
6S13|1|A|U|1683
6S13|1|A|A|1684
6S13|1|A|A|1685
6S13|1|A|G|1686

Current chains

Chain A

23S ribosomal RNA

Nearby chains