J3_6S13_016

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

UG*CACCAGUGG*CGA

Length

14 nucleotides

Bulged bases

6S13|1|a|A|726, 6S13|1|a|A|729, 6S13|1|a|U|731

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|a|U|680
6S13|1|a|G|681
*
6S13|1|a|C|725
6S13|1|a|A|726
6S13|1|a|C|727
6S13|1|a|C|728
6S13|1|a|A|729
6S13|1|a|G|730
6S13|1|a|U|731
6S13|1|a|G|732
6S13|1|a|G|733
*
6S13|1|a|C|740
6S13|1|a|G|741
6S13|1|a|A|742

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain k

30S ribosomal protein S11

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21