J3_6S13_018

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|a|U|952
6S13|1|a|G|953
6S13|1|a|G|954
6S13|1|a|A|955
6S13|1|a|G|956
*
6S13|1|a|C|1244
6S13|1|a|U|1245
6S13|1|a|A|1246
6S13|1|a|C|1247
*
6S13|1|a|G|1347
6S13|1|a|G|1348
6S13|1|a|A|1349
6S13|1|a|A|1350

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain m

30S ribosomal protein S13

Chain v

Ribosome hibernation promoting factor