J3_6S13_022

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

6S13|1|a|U|1250, 6S13|1|a|U|1311, 6S13|1|a|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|a|C|1247
6S13|1|a|A|1248
6S13|1|a|A|1249
6S13|1|a|U|1250
6S13|1|a|G|1251
*
6S13|1|a|C|1306
6S13|1|a|U|1307
6S13|1|a|C|1308
6S13|1|a|A|1309
6S13|1|a|G|1310
6S13|1|a|U|1311
6S13|1|a|U|1312
6S13|1|a|C|1313
*
6S13|1|a|G|1344
6S13|1|a|C|1345
6S13|1|a|U|1346
6S13|1|a|G|1347

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain m

30S ribosomal protein S13