J3_6S13_025

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CAAAC*GGGUUGUAG*CUG

Length

17 nucleotides

Bulged bases

6S13|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S13_025 not in the Motif Atlas

Homologous match to J3_4WF9_014

Geometric discrepancy: 0.4236

The information below is about J3_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|A|C|272
6S13|1|A|A|273
6S13|1|A|A|274
6S13|1|A|A|275
6S13|1|A|C|276
*
6S13|1|A|G|295
6S13|1|A|G|296
6S13|1|A|G|297
6S13|1|A|U|298
6S13|1|A|U|299
6S13|1|A|G|300
6S13|1|A|U|301
6S13|1|A|A|302
6S13|1|A|G|303
*
6S13|1|A|C|414
6S13|1|A|U|415
6S13|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains