J3_6S13_029

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

AUAGGCGAAGCGUG*CACGUC*GGGAGAAGACAUUGUGUCUUCGAGUCGUUGAUUU

Length

54 nucleotides

Bulged bases

6S13|1|A|A|1489, 6S13|1|A|A|1575, 6S13|1|A|A|1580, 6S13|1|A|U|1581, 6S13|1|A|U|1582, 6S13|1|A|G|1583, 6S13|1|A|U|1584, 6S13|1|A|G|1585, 6S13|1|A|U|1586, 6S13|1|A|U|1602

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|A|A|1481
6S13|1|A|U|1482
6S13|1|A|A|1483
6S13|1|A|G|1484
6S13|1|A|G|1485
6S13|1|A|C|1486
6S13|1|A|G|1487
6S13|1|A|A|1488
6S13|1|A|A|1489
6S13|1|A|G|1490
6S13|1|A|C|1491
6S13|1|A|G|1492
6S13|1|A|U|1493
6S13|1|A|G|1494
*
6S13|1|A|C|1506
6S13|1|A|A|1507
6S13|1|A|C|1508
6S13|1|A|G|1509
6S13|1|A|U|1510
6S13|1|A|C|1511
*
6S13|1|A|G|1570
6S13|1|A|G|1571
6S13|1|A|G|1572
6S13|1|A|A|1573
6S13|1|A|G|1574
6S13|1|A|A|1575
6S13|1|A|A|1576
6S13|1|A|G|1577
6S13|1|A|A|1578
6S13|1|A|C|1579
6S13|1|A|A|1580
6S13|1|A|U|1581
6S13|1|A|U|1582
6S13|1|A|G|1583
6S13|1|A|U|1584
6S13|1|A|G|1585
6S13|1|A|U|1586
6S13|1|A|C|1587
6S13|1|A|U|1588
6S13|1|A|U|1589
6S13|1|A|C|1590
6S13|1|A|G|1591
6S13|1|A|A|1592
6S13|1|A|G|1593
6S13|1|A|U|1594
6S13|1|A|C|1595
6S13|1|A|G|1596
6S13|1|A|U|1597
6S13|1|A|U|1598
6S13|1|A|G|1599
6S13|1|A|A|1600
6S13|1|A|U|1601
6S13|1|A|U|1602
6S13|1|A|U|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains