J3_6S13_035

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GACAAC*GCCUUCCC*GGGAC

Length

19 nucleotides

Bulged bases

6S13|1|a|A|1016, 6S13|1|a|C|1032, 6S13|1|a|U|1033, 6S13|1|a|U|1034, 6S13|1|a|C|1035, 6S13|1|a|G|1045, 6S13|1|a|G|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|a|G|1012
6S13|1|a|A|1013
6S13|1|a|C|1014
6S13|1|a|A|1015
6S13|1|a|A|1016
6S13|1|a|C|1017
*
6S13|1|a|G|1030
6S13|1|a|C|1031
6S13|1|a|C|1032
6S13|1|a|U|1033
6S13|1|a|U|1034
6S13|1|a|C|1035
6S13|1|a|C|1036
6S13|1|a|C|1037
*
6S13|1|a|G|1044
6S13|1|a|G|1045
6S13|1|a|G|1046
6S13|1|a|A|1047
6S13|1|a|C|1048

Current chains

Chain a

16S ribosomal RNA

Nearby chains