Loop J3_6S13

3D structure

PDB id: 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å

Loop

Sequence: CUUAAGCUUAGUUGCCAUC*GGGCACUCUAAGUUGACUGC*GAGGAAGGUGGGG
Length: 52 nucleotides
Bulged bases: 6S13|1|a|U|1137, 6S13|1|a|C|1139, 6S13|1|a|U|1193
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6S13|1|a|C|1125
6S13|1|a|U|1126
6S13|1|a|U|1127
6S13|1|a|A|1128
6S13|1|a|A|1129
6S13|1|a|G|1130
6S13|1|a|C|1131
6S13|1|a|U|1132
6S13|1|a|U|1133
6S13|1|a|A|1134
6S13|1|a|G|1135
6S13|1|a|U|1136
6S13|1|a|U|1137
6S13|1|a|G|1138
6S13|1|a|C|1139
6S13|1|a|C|1140
6S13|1|a|A|1141
6S13|1|a|U|1142
6S13|1|a|C|1143
*
6S13|1|a|G|1152
6S13|1|a|G|1153
6S13|1|a|G|1154
6S13|1|a|C|1155
6S13|1|a|A|1156
6S13|1|a|C|1157
6S13|1|a|U|1158
6S13|1|a|C|1159
6S13|1|a|U|1160
6S13|1|a|A|1161
6S13|1|a|A|1162
6S13|1|a|G|1163
6S13|1|a|U|1164
6S13|1|a|U|1165
6S13|1|a|G|1166
6S13|1|a|A|1167
6S13|1|a|C|1168
6S13|1|a|U|1169
6S13|1|a|G|1170
6S13|1|a|C|1171
*
6S13|1|a|G|1185
6S13|1|a|A|1186
6S13|1|a|G|1187
6S13|1|a|G|1188
6S13|1|a|A|1189
6S13|1|a|A|1190
6S13|1|a|G|1191
6S13|1|a|G|1192
6S13|1|a|U|1193
6S13|1|a|G|1194
6S13|1|a|G|1195
6S13|1|a|G|1196
6S13|1|a|G|1197

Current chains

Chain a: 16S ribosomal RNA

Nearby chains

Chain b: 30S ribosomal protein S2
Chain c: 30S ribosomal protein S3
Chain i: 30S ribosomal protein S9
Chain j: 30S ribosomal protein S10
Chain n: 30S ribosomal protein S14 type Z

J3_6S13_038