J3_6S47_001
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6S47|1|AA|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0623
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|AA|C|113
6S47|1|AA|A|114
6S47|1|AA|A|115
6S47|1|AA|A|116
6S47|1|AA|U|117
6S47|1|AA|U|118
6S47|1|AA|U|119
6S47|1|AA|G|120
6S47|1|AA|A|121
6S47|1|AA|A|122
6S47|1|AA|A|123
*
6S47|1|AA|U|149
6S47|1|AA|A|150
6S47|1|AA|A|151
6S47|1|AA|U|152
6S47|1|AA|U|153
6S47|1|AA|U|154
6S47|1|AA|G|155
6S47|1|AA|G|156
6S47|1|AA|A|157
6S47|1|AA|G|158
*
6S47|1|AA|C|263
6S47|1|AA|G|264
6S47|1|AA|A|265
6S47|1|AA|A|266
6S47|1|AA|G|267
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L15-A
- Chain Aj
- 60S ribosomal protein L35-A
- Chain Ak
- 60S ribosomal protein L36-A
Coloring options: