J3_6S47_003
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6S47|1|AA|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_003 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0841
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|AA|U|502
6S47|1|AA|C|503
*
6S47|1|AA|G|588
6S47|1|AA|A|589
6S47|1|AA|G|590
6S47|1|AA|G|591
6S47|1|AA|A|592
6S47|1|AA|C|593
6S47|1|AA|U|594
6S47|1|AA|G|595
6S47|1|AA|C|596
6S47|1|AA|G|597
*
6S47|1|AA|C|606
6S47|1|AA|A|607
6S47|1|AA|A|608
6S47|1|AA|G|609
6S47|1|AA|G|610
6S47|1|AA|A|611
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4-A
- Chain AH
- 60S ribosomal protein L6-A
- Chain AI
- 60S ribosomal protein L7-A
- Chain Ag
- 60S ribosomal protein L32
Coloring options: