J3_6S47_005

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

6S47|1|AA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_005 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.0932

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6S47|1|AA|A|828
6S47|1|AA|U|829
6S47|1|AA|A|830
6S47|1|AA|G|831
*
6S47|1|AA|C|863
6S47|1|AA|G|864
6S47|1|AA|U|865
6S47|1|AA|A|866
6S47|1|AA|G|867
*
6S47|1|AA|U|892
6S47|1|AA|C|893
6S47|1|AA|G|894
6S47|1|AA|A|895
6S47|1|AA|A|896
6S47|1|AA|U|897

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain AT

60S ribosomal protein L19-A

Chain Ai

60S ribosomal protein L34-A