J3_6S47_026
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 6S47|1|BA|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_026 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1217
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6S47|1|BA|U|1283
6S47|1|BA|C|1284
6S47|1|BA|U|1285
6S47|1|BA|U|1286
6S47|1|BA|A|1287
6S47|1|BA|G|1288
*
6S47|1|BA|C|1327
6S47|1|BA|G|1328
6S47|1|BA|A|1329
6S47|1|BA|G|1330
6S47|1|BA|A|1331
6S47|1|BA|C|1332
*
6S47|1|BA|G|1419
6S47|1|BA|C|1420
6S47|1|BA|A|1421
6S47|1|BA|A|1422
6S47|1|BA|U|1423
6S47|1|BA|A|1424
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BD
- 40S ribosomal protein S2
- Chain BE
- 40S ribosomal protein S3
- Chain BR
- 40S ribosomal protein S16-A
- Chain BS
- 40S ribosomal protein S17-A
- Chain BV
- 40S ribosomal protein S20
- Chain Be
- 40S ribosomal protein S29-A
Coloring options: