J3_6S47_027

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

6S47|1|BA|A|1321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_027 not in the Motif Atlas

Geometric match to J3_8C3A_085

Geometric discrepancy: 0.398

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6S47|1|BA|U|1293
6S47|1|BA|G|1294
*
6S47|1|BA|U|1303
6S47|1|BA|G|1304
6S47|1|BA|U|1305
6S47|1|BA|C|1306
*
6S47|1|BA|G|1318
6S47|1|BA|A|1319
6S47|1|BA|U|1320
6S47|1|BA|A|1321
6S47|1|BA|A|1322

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BB

40S ribosomal protein S0-A

Chain BD

40S ribosomal protein S2

Chain BS

40S ribosomal protein S17-A