3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
6S47|1|AA|U|343, 6S47|1|AA|A|351, 6S47|1|AC|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S47_032 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0475
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6S47|1|AA|C|340
6S47|1|AA|G|341
6S47|1|AA|A|342
6S47|1|AA|U|343
6S47|1|AA|A|344
6S47|1|AA|G|345
6S47|1|AA|C|346
6S47|1|AA|G|347
6S47|1|AA|A|348
6S47|1|AA|A|349
6S47|1|AA|C|350
6S47|1|AA|A|351
6S47|1|AA|A|352
6S47|1|AA|G|353
6S47|1|AA|U|354
6S47|1|AA|A|355
6S47|1|AA|C|356
*
6S47|1|AA|G|363
6S47|1|AA|G|364
6S47|1|AA|A|365
6S47|1|AA|A|366
6S47|1|AA|A|367
6S47|1|AA|G|368
*
6S47|1|AC|C|21
6S47|1|AC|U|22
6S47|1|AC|U|23
6S47|1|AC|G|24

Current chains

Chain AA
28S ribosomal RNA
Chain AC
5.8S ribosomal RNA

Nearby chains

Chain AF
60S ribosomal protein L4-A
Chain Aa
60S ribosomal protein L26-A
Chain Al
60S ribosomal protein L37-A
Chain An
60S ribosomal protein L39

Coloring options:


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