J3_6S47_032
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6S47|1|AA|U|343, 6S47|1|AA|A|351, 6S47|1|AC|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_032 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0475
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6S47|1|AA|C|340
6S47|1|AA|G|341
6S47|1|AA|A|342
6S47|1|AA|U|343
6S47|1|AA|A|344
6S47|1|AA|G|345
6S47|1|AA|C|346
6S47|1|AA|G|347
6S47|1|AA|A|348
6S47|1|AA|A|349
6S47|1|AA|C|350
6S47|1|AA|A|351
6S47|1|AA|A|352
6S47|1|AA|G|353
6S47|1|AA|U|354
6S47|1|AA|A|355
6S47|1|AA|C|356
*
6S47|1|AA|G|363
6S47|1|AA|G|364
6S47|1|AA|A|365
6S47|1|AA|A|366
6S47|1|AA|A|367
6S47|1|AA|G|368
*
6S47|1|AC|C|21
6S47|1|AC|U|22
6S47|1|AC|U|23
6S47|1|AC|G|24
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4-A
- Chain Aa
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L37-A
- Chain An
- 60S ribosomal protein L39
Coloring options: