J3_6S47_034
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CACCAU
- Length
- 23 nucleotides
- Bulged bases
- 6S47|1|AA|C|1556, 6S47|1|AA|A|1558, 6S47|1|AA|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_034 not in the Motif Atlas
- Homologous match to J3_9PN5_015
- Geometric discrepancy: 0.2209
- The information below is about J3_9PN5_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_53783.2
- Basepair signature
- cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F
- Number of instances in this motif group
- 3
Unit IDs
6S47|1|AA|A|1537
6S47|1|AA|G|1538
6S47|1|AA|A|1539
6S47|1|AA|U|1540
6S47|1|AA|G|1541
6S47|1|AA|G|1542
*
6S47|1|AA|C|1551
6S47|1|AA|G|1552
6S47|1|AA|U|1553
6S47|1|AA|U|1554
6S47|1|AA|U|1555
6S47|1|AA|C|1556
6S47|1|AA|A|1557
6S47|1|AA|A|1558
6S47|1|AA|A|1559
6S47|1|AA|G|1560
6S47|1|AA|G|1561
*
6S47|1|AA|C|1579
6S47|1|AA|A|1580
6S47|1|AA|C|1581
6S47|1|AA|C|1582
6S47|1|AA|A|1583
6S47|1|AA|U|1584
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AD
- 60S ribosomal protein L2-A
- Chain AJ
- 60S ribosomal protein L8-A
- Chain AP
- 60S ribosomal protein L15-A
- Chain AZ
- 60S ribosomal protein L25
- Chain Al
- 60S ribosomal protein L37-A
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