J3_6S47_035

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_035 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0816

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6S47|1|AA|A|1654
6S47|1|AA|G|1655
6S47|1|AA|A|1656
6S47|1|AA|C|1657
6S47|1|AA|G|1658
*
6S47|1|AA|C|1791
6S47|1|AA|C|1792
*
6S47|1|AA|G|1796
6S47|1|AA|A|1797
6S47|1|AA|A|1798
6S47|1|AA|A|1799
6S47|1|AA|A|1800
6S47|1|AA|U|1801

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain Ai

60S ribosomal protein L34-A

Chain Ar

60S ribosomal protein L43-A