J3_6S47_037
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6S47|1|AA|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_037 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0573
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6S47|1|AA|G|2651
6S47|1|AA|U|2652
6S47|1|AA|C|2653
*
6S47|1|AA|G|2754
6S47|1|AA|C|2755
6S47|1|AA|C|2756
6S47|1|AA|U|2757
6S47|1|AA|A|2758
6S47|1|AA|U|2759
6S47|1|AA|C|2760
6S47|1|AA|G|2761
6S47|1|AA|A|2762
6S47|1|AA|U|2763
6S47|1|AA|C|2764
6S47|1|AA|C|2765
*
6S47|1|AA|G|2793
6S47|1|AA|G|2794
6S47|1|AA|U|2795
6S47|1|AA|G|2796
6S47|1|AA|C|2797
6S47|1|AA|C|2798
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AS
- 60S ribosomal protein L18-A
- Chain AV
- 60S ribosomal protein L21-A
- Chain Ac
- 60S ribosomal protein L28
- Chain Aq
- 60S ribosomal protein L42-A
Coloring options: