J3_6S47_040

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6S47|1|BA|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0766

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6S47|1|BA|A|41
6S47|1|BA|G|42
6S47|1|BA|A|43
6S47|1|BA|U|44
6S47|1|BA|U|45
6S47|1|BA|A|46
6S47|1|BA|A|47
6S47|1|BA|G|48
*
6S47|1|BA|C|431
6S47|1|BA|G|432
6S47|1|BA|C|433
6S47|1|BA|G|434
6S47|1|BA|C|435
6S47|1|BA|A|436
6S47|1|BA|A|437
6S47|1|BA|A|438
6S47|1|BA|U|439
*
6S47|1|BA|A|464
6S47|1|BA|G|465
6S47|1|BA|U|466

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BK

40S ribosomal protein S9-A

Chain BY

40S ribosomal protein S23-A