J3_6SGC_003

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

6SGC|1|54|C|1237, 6SGC|1|54|G|1271, 6SGC|1|54|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|U|982
6SGC|1|54|C|983
6SGC|1|54|C|984
*
6SGC|1|54|G|1070
6SGC|1|54|C|1071
6SGC|1|54|C|1072
6SGC|1|54|G|1073
6SGC|1|54|G|1074
*
6SGC|1|54|C|1236
6SGC|1|54|C|1237
6SGC|1|54|A|1238
6SGC|1|54|C|1239
6SGC|1|54|G|1244
6SGC|1|54|C|1245
6SGC|1|54|G|1246
6SGC|1|54|U|1247
6SGC|1|54|C|1248
6SGC|1|54|C|1249
6SGC|1|54|C|1250
6SGC|1|54|C|1251
6SGC|1|54|C|1252
6SGC|1|54|G|1271
6SGC|1|54|C|1272
6SGC|1|54|G|1273

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain E2

60S ribosomal protein L6

Chain F2

uL30

Chain b2

eL29