J3_6SGC_017

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6SGC|1|54|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|4970
6SGC|1|54|A|4971
6SGC|1|54|U|4972
*
6SGC|1|54|G|4986
6SGC|1|54|C|4987
6SGC|1|54|U|4988
6SGC|1|54|U|4989
6SGC|1|54|C|4990
6SGC|1|54|U|4991
*
6SGC|1|54|A|5060
6SGC|1|54|A|5061
6SGC|1|54|G|5062
6SGC|1|54|G|5063

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain P2

uL22

Chain d2

eL31