J3_6SGC_023
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6SGC|1|A1|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_023 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0858
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SGC|1|A1|A|938
6SGC|1|A1|U|939
6SGC|1|A1|U|940
6SGC|1|A1|C|941
*
6SGC|1|A1|G|985
6SGC|1|A1|G|986
6SGC|1|A1|A|987
6SGC|1|A1|C|988
6SGC|1|A1|C|989
6SGC|1|A1|A|990
6SGC|1|A1|G|991
6SGC|1|A1|A|992
6SGC|1|A1|G|993
*
6SGC|1|A1|C|1000
6SGC|1|A1|A|1001
6SGC|1|A1|U|1002
6SGC|1|A1|U|1003
6SGC|1|A1|U|1004
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S3a
- Chain O1
- Ribosomal_S13_N domain-containing protein
- Chain P1
- uS11
- Chain b1
- eS26
- Chain p2
- eL43
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