J3_6SGC_024

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6SGC|1|A1|C|1138, 6SGC|1|A1|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|C|1094
6SGC|1|A1|C|1095
6SGC|1|A1|G|1096
*
6SGC|1|A1|U|1136
6SGC|1|A1|U|1137
6SGC|1|A1|C|1138
6SGC|1|A1|C|1139
6SGC|1|A1|G|1140
*
6SGC|1|A1|C|1147
6SGC|1|A1|A|1148
6SGC|1|A1|A|1149
6SGC|1|A1|A|1150
6SGC|1|A1|G|1151

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain B1

uS2

Chain W1

eS21

Chain X1

Ribosomal protein S15a

Chain b1

eS26

Chain c1

40S ribosomal protein S27