J3_6SGC_027
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6SGC|1|A1|G|1256, 6SGC|1|A1|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_027 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0839
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|A1|C|1237
6SGC|1|A1|U|1238
6SGC|1|A1|U|1239
6SGC|1|A1|A|1240
6SGC|1|A1|A|1241
6SGC|1|A1|U|1242
6SGC|1|A1|U|1243
6SGC|1|A1|U|1244
*
6SGC|1|A1|G|1255
6SGC|1|A1|G|1256
6SGC|1|A1|G|1257
6SGC|1|A1|A|1258
6SGC|1|A1|A|1259
6SGC|1|A1|A|1260
6SGC|1|A1|C|1261
6SGC|1|A1|C|1262
6SGC|1|A1|U|1263
6SGC|1|A1|C|1264
6SGC|1|A1|A|1265
6SGC|1|A1|C|1266
*
6SGC|1|A1|G|1516
6SGC|1|A1|G|1517
6SGC|1|A1|C|1518
6SGC|1|A1|U|1519
6SGC|1|A1|G|1520
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain Q1
- uS19
- Chain T1
- eS13
- Chain V1
- Ribosomal_S10 domain-containing protein
- Chain e1
- uS14
Coloring options: