J3_6SGC_033

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6SGC|1|54|C|216, 6SGC|1|54|C|217, 6SGC|1|54|A|218, 6SGC|1|54|G|219, 6SGC|1|54|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|196
6SGC|1|54|A|197
6SGC|1|54|A|198
6SGC|1|54|G|199
*
6SGC|1|54|C|215
6SGC|1|54|C|216
6SGC|1|54|C|217
6SGC|1|54|A|218
6SGC|1|54|G|219
6SGC|1|54|C|220
6SGC|1|54|C|221
6SGC|1|54|C|222
6SGC|1|54|G|223
6SGC|1|54|U|224
6SGC|1|54|G|225
6SGC|1|54|G|226
6SGC|1|54|A|227
6SGC|1|54|C|228
*
6SGC|1|54|G|240
6SGC|1|54|G|241
6SGC|1|54|U|242
6SGC|1|54|A|243
6SGC|1|54|G|244

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain Y2

Ribosomal protein L26