J3_6SGC_036

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

6SGC|1|54|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|451
6SGC|1|54|A|452
6SGC|1|54|G|453
6SGC|1|54|U|454
6SGC|1|54|C|455
*
6SGC|1|54|G|701
6SGC|1|54|U|702
6SGC|1|54|G|703
6SGC|1|54|C|704
6SGC|1|54|G|705
*
6SGC|1|54|C|1292
6SGC|1|54|G|1293
6SGC|1|54|A|1294
6SGC|1|54|U|1295
6SGC|1|54|G|1296

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain E2

60S ribosomal protein L6

Chain e2

eL32

Chain f2

eL33

Chain r2

Ribosomal_L28e domain-containing protein