J3_6SGC_037

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUG*CGCUAAGGAGUG*CUCAC

Length

21 nucleotides

Bulged bases

6SGC|1|54|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|G|1969
6SGC|1|54|A|1970
6SGC|1|54|U|1971
6SGC|1|54|G|1972
*
6SGC|1|54|C|1994
6SGC|1|54|G|1995
6SGC|1|54|C|1996
6SGC|1|54|U|1997
6SGC|1|54|A|1998
6SGC|1|54|A|1999
6SGC|1|54|G|2000
6SGC|1|54|G|2001
6SGC|1|54|A|2002
6SGC|1|54|G|2003
6SGC|1|54|U|2004
6SGC|1|54|G|2005
*
6SGC|1|54|C|2014
6SGC|1|54|U|2015
6SGC|1|54|C|2016
6SGC|1|54|A|2017
6SGC|1|54|C|2018

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain s2

uL10

Chain t2

Ribosomal protein L12